Type Class path ID Name Inside Outside VolumeIndex Memo
System Cell / CELL The cell
System Environment / ENVIRONMENT The culture medium /ENVIRONMENT:VOLUME
System Cytoplasm /CELL CYTOPLASM The cytoplasm /CELL/CYTOPLASM:VOLUME
System Membrane /CELL MEMBRANE The membrane /CELL:CYTOPLASM /:ENVIRONMENT
Type Class path ID Name Arg_tag Arg_coeff init_act Memo
Reactor ConstantParameterReactor /ENVIRONMENT VOLUME Volume index for environment Value [Volume (liter)] [usually same as Arg_coeff]
Reactor ConstantParameterReactor /CELL/CYTOPLASM VOLUME Volume index for cytoplasm Value [Volume (liter)] [usually same as Arg_coeff]
Type path ID Name QTY Memo
Substance [systempath of super system] [ID name] [Substance name] [quantity]
Type path ID Name CONC
Substance [systempath of super system] [ID name] [Substance name] [concentration(mol/liter)]
Type Class path ID Name S_ID S_path S_Coeff P_ID P_path P_Coeff C_ID C_path Arg_tag Arg_coeff
Reactor [Reactor class name] [systempath of super system] [ID name] [Reactor name] [ID name of substrate] [systempath of supersystem of substrate] [stoichiometric coeffcient of substrate] [ID name of product] [systempath of supersystem of product] [stoichiometric coeffcient of product] [ID name of catalyst] [systempath of supersystem of catalyst] [Parameter name] [Parameter value]